The Zoning Officer shall refer all applications for permits pertaining to regulated activities on an historic site, or within an historic district, to the Commission for a written report on the application of the zoning provisions concerning historic preservation to any of those aspects of the change proposed, which were not determined by approval of an application for development by a municipal agency, pursuant to the Municipal Land Use Law, N.J.S.A. 40:55D-1 et seq. The Commission shall submit its report on the application to the Zoning Officer within 45 days of his referral of the application to the Commission. If, within the forty-five-day period, the Commission recommends to the Zoning Officer against the issuance of a permit, or recommends conditions to the permit to be issued, the Zoning Officer shall deny issuance of a permit or include the conditions in the permit, as the case may be. Failure of the Commission to report within the forty-five-day period shall be deemed to constitute a report in favor of issuance of the permit and without the recommendation of conditions to the permit.