This section shall not apply to any land division which constitutes a Class A or B Regional Project under the Adirondack Park Agency Act or any action which requires a permit under the Freshwater Wetlands Act or the Wild, Scenic or Recreational Rivers System Act. In addition, all land uses and development which are related to the jurisdictional subdivision or which are independently Class A or B Regional Projects shall require a permit from the Adirondack Park Agency or the Town, respectively. In every case, the shoreline restrictions of this chapter shall apply.